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Overview
Related Genomes
Quality Control
Organism Summary | |
|---|---|
| Catalog Number | ATCC® 30174™ |
| Strain Alias | HB1 |
| Isolation | Spinal fluid |
| Biosafety Level | 2 |
| Type Strain | No |
Assembly Summary | |
|---|---|
| Date Published | December 12, 2025 |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 470 |
Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 107,388 |
| Oxford Nanopore Median Q Score | 40 |
| Illumina Read Count | 7,370,276 |
| Illumina Mean Coverage Depth | 37.732× |
| Illumina Median Q Score | 40 |
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Microbes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Product
Sequencing Quality Control
Sequencing Quality Control Metrics | |
|---|---|
| Number of trimmed reads | 7,370,276 |
| Median Q score, all bases | 40 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
Notes
This protist was assembled and curated using Oatmeal v3.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions. This genome has been additionally curated and approved for publication despite not meeting our default Illumina coverage thresholds.
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