Organism Summary | |
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Catalog Number | ATCC® 9930™ |
Strain Alias | NRS 3DOa2 [CCUG 27879, CFBP 5561, DSM 30135, HAMBI 2148, ICMP 12623, IFO 14782, LMG 6133, NCAIM B.01520, NRRL L-45, NZP 4027, ORS 665, USDA 1002] |
Isolation | Alfalfa, Medicago sativa, and sweet clover, Melilotus alba |
Tags | Methylation DataType Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Assembly Summary | |
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Date Published | October 28, 2020 |
Length | 7,377,046 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 4 (All Circularized) |
N50 | 3,959,359 nt |
%GC | 61.97% |
Annotations Summary | |
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Number of CDS | 7105 |
Number of Hypothetical Proteins | 992 |
Number of tRNA | 55 |
Number of 5s rRNA | 3 |
Number of 16s rRNA | 3 |
Number of 23s rRNA | 3 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 62,938 |
Oxford Nanopore Median Q Score | 23 |
Illumina Read Count | 4,249,320 |
Illumina Mean Coverage Depth | 102.615× |
Illumina Median Q Score | 38 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 4,249,320 |
Median Q score, all bases | 38 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 99.59% |
Estimated genome contamination | 0.31% |
Average depth of coverage | 102.615× |