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Overview
Genome Browser
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 9930™ |
| Strain Alias | NRS 3DOa2 [CCUG 27879, CFBP 5561, DSM 30135, HAMBI 2148, ICMP 12623, IFO 14782, LMG 6133, NCAIM B.01520, NRRL L-45, NZP 4027, ORS 665, USDA 1002] |
| Isolation | Alfalfa, Medicago sativa, and sweet clover, Melilotus alba |
| Tags | Methylation DataType Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | October 28, 2020 |
| Length | 7,377,046 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 4 (All Circularized) |
| N50 | 3,959,359 nt |
| %GC | 61.97% |
| Annotations Summary | |
|---|---|
| Number of CDS | 7105 |
| Number of Hypothetical Proteins | 992 |
| Number of tRNA | 55 |
| Number of 5s rRNA | 3 |
| Number of 16s rRNA | 3 |
| Number of 23s rRNA | 3 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 62,938 |
| Oxford Nanopore Median Q Score | 23 |
| Illumina Read Count | 4,249,320 |
| Illumina Mean Coverage Depth | 102.615× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 4,249,320 |
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 99.59% |
| Estimated genome contamination | 0.31% |
| Average depth of coverage | 102.615× |
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