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Overview
Annotations
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 6205™ |
| Strain Name | QM 459 [1042.4, CBS 148.51, CBS 161.52, CEB 1218.1, CEB 1218.2, CECT 2701, DSM 1962, IFO 6347, IMI 45550, MUCL 1984, NRRL 1870, UPSC 3159, VTT D-81079] |
| Isolation | Stored cotton |
| Biosafety Level | 1 |
| Type Strain | No |
| Assembly Summary | |
|---|---|
| Date Published | December 22, 2020 |
| Length | 34,479,087 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 11 (0 Circularized) |
| N50 | 4,737,148 nt |
| %GC | 56.07% |
| Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 758 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 324,552 |
| Oxford Nanopore Median Q Score | 26 |
| Illumina Read Count | 65,207,674 |
| Illumina Mean Coverage Depth | 268.688× |
| Illumina Median Q Score | 37 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
Number of trimmed reads65,207,674
Median Q score, all bases37
Percent of median Q scores per cycle greater than 251%
Ambiguous content (% N bases)0%
BUSCO Quality Control
Metrics assessing the assembly quality (from BUSCO).
2 out of 2 passed
PassedEstimated genome completeness98.55%
PassedAverage depth of coverage268.688×
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