ATCC® 6915™ | Janthinobacterium sp.

Overview

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Quality Control

Assembly Summary
Date Published	June 3, 2024
Length	6,190,581 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	1 (All Circularized)
N50	6,190,581 nt
%GC	62.61%

Annotations Summary
Number of CDS	5464
Number of Hypothetical Proteins	706
Number of tRNA	92
Number of 5s rRNA	9
Number of 16s rRNA	8
Number of 23s rRNA	8

Input Reads Summary
Oxford Nanopore Read Count	73,510
Oxford Nanopore Median Q Score	23
Illumina Read Count	8,799,808
Illumina Mean Coverage Depth	210.627×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	8,799,808
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.65%
Estimated genome contamination	0.98%
Illumina depth of coverage	210.627×
ONT depth of coverage	49.536×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions