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Overview
Genome Browser
Related Genomes
Quality Control
Organism Summary | |
|---|---|
| Catalog Number | ATCC® BAA-2146™ |
| Strain Alias | 1000527, 7561 |
| Isolation | Urine |
| Biosafety Level | 2 |
| Type Strain | No |
Assembly Summary | |
|---|---|
| Date Published | May 14, 2019 |
| Length | 5,780,684 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 5 (All Circularized) |
| N50 | 5,435,730 nt |
| %GC | 56.97% |
Annotations Summary | |
|---|---|
| Number of CDS | 5675 |
| Number of Hypothetical Proteins | 456 |
| Number of tRNA | 85 |
| Number of 5s rRNA | 9 |
| Number of 16s rRNA | 8 |
| Number of 23s rRNA | 8 |
Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 52,605 |
| Oxford Nanopore Median Q Score | 14 |
| Illumina Read Count | 4,991,697 |
| Illumina Mean Coverage Depth | 189.235× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Genome
Sequencing Quality Control
Sequencing Quality Control Metrics | |
|---|---|
| Number of trimmed reads | 4,991,697 |
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
Assembly Quality Control
Assembly Quality Control Metrics | |
|---|---|
| Estimated genome completeness | 98.93% |
| Estimated genome contamination | 1.35% |
| Illumina depth of coverage | 189.235× |
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