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Overview
Annotations
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® MYA-4449™ |
| Strain Alias | CBS 8840 (IFO 1802; NCYC 2889; MUCL 46198) |
| Isolation | Decayed leaf |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | October 30, 2020 |
| Length | 12,031,325 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 20 (0 Circularized) |
| N50 | 922,956 nt |
| %GC | 39.67% |
| Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 733 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 616,282 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 10,135,260 |
| Illumina Mean Coverage Depth | 184.335× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Genomes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 10,135,260 |
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| BUSCO Quality Control | |
|---|---|
| Estimated genome completeness | 87.86% |
| Average depth of coverage | 184.335× |
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