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  • Vibrio alginolyticus

Vibrio alginolyticus (ATCC® 17749™)

Overview
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Related Genomes
Quality Control
Assembly Summary
Date PublishedAugust 27, 2019
Length5,158,848 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs2 (All Circularized)
Assembly LevelComplete
N503,344,256 nt
%GC44.69%
Organism Summary
NameATCC® 17749™
IsolationSpoiled horse mackerel that caused food poisoning
TagsType Strain
Biosafety Level1
Type StrainYes
Annotations Summary
Number of CDS4,538
Number of Hypothetical Proteins1,810
Number of tRNA122
Number of 5s rRNA13
Number of 16s rRNA12
Number of 23s rRNA12
Input Reads Summary
Oxford Nanopore Read Count92,990
Oxford Nanopore Median Q Score16
Illumina Read Count6,315,068
Illumina Mean Coverage Depth261.149×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads6,315,068
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0.33%
PassedAverage depth of coverage261.149×
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