Organism Summary | |
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Catalog Number | ATCC® 27122™ |
Strain Alias | 62 [ACAM 345, DSM 4742] |
Isolation | Seawater |
Tags | Methylation DataType Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Assembly Summary | |
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Date Published | September 5, 2023 |
Length | 3,920,831 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 2 (1 Circularized) |
N50 | 2,924,375 nt |
%GC | 67.12% |
Annotations Summary | |
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Number of CDS | 3579 |
Number of Hypothetical Proteins | 287 |
Number of tRNA | 66 |
Number of 5s rRNA | 5 |
Number of 16s rRNA | 5 |
Number of 23s rRNA | 5 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 62,761 |
Oxford Nanopore Median Q Score | 22 |
Illumina Read Count | 9,156,979 |
Illumina Mean Coverage Depth | 319.826× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 9,156,979 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 99.86% |
Estimated genome contamination | 0.52% |
Average depth of coverage | 319.826× |