Purchased a strain from ATCC? Enter in the lot number to download the genome or learn more about our supporting memberships here.
Overview
Genome Browser
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® BAA-2190™ |
| Strain Alias | 98-3306 |
| Genotype | ipaH+, stx1-, stx2-, eae-, E-hly- |
| Biosafety Level | 2 |
| Type Strain | No |
| Assembly Summary | |
|---|---|
| Date Published | August 1, 2022 |
| Length | 5,226,545 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 6 (2 Circularized) |
| N50 | 4,878,520 nt |
| %GC | 50.94% |
| Annotations Summary | |
|---|---|
| Number of CDS | 5190 |
| Number of Hypothetical Proteins | 219 |
| Number of tRNA | 96 |
| Number of 5s rRNA | 8 |
| Number of 16s rRNA | 7 |
| Number of 23s rRNA | 7 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 152,365 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 7,794,321 |
| Illumina Mean Coverage Depth | 205.528× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Genomes
0 out of 0 selected (Select All / Deselect All).
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 7,794,321 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 97.79% |
| Estimated genome contamination | 0.34% |
| Illumina depth of coverage | 205.528× |
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline