ATCC® BAA-979™ | Saccharococcus caldoxylosilyticus

Overview

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Quality Control

Assembly Summary
Date Published	June 10, 2025
Length	3,891,771 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	2 (All Circularized)
N50	3,821,813 nt
%GC	44.16%

Annotations Summary
Number of CDS	3854
Number of Hypothetical Proteins	386
Number of tRNA	90
Number of 5s rRNA	8
Number of 16s rRNA	9
Number of 23s rRNA	9

Input Reads Summary
Oxford Nanopore Read Count	320,846
Oxford Nanopore Median Q Score	36
Illumina Read Count	9,646,460
Illumina Mean Coverage Depth	359.508×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

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		Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length

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Sequencing Quality Control
Number of trimmed reads	9,646,460
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.25%
Estimated genome contamination	0%
Illumina depth of coverage	359.508×
ONT depth of coverage	396.902×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions