ATCC® BAA-979™ | Saccharococcus caldoxylosilyticus

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	June 10, 2025
Length	3,891,771 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	2 (All Circularized)
N50	3,821,813 nt
%GC	44.16%

Organism Summary
Name	ATCC® BAA-979™
Isolation	Stromboli; isolated June 2000
Tags	Type Strain
Biosafety Level	1
Type Strain

Annotations Summary
Number of CDS	3830
Number of Hypothetical Proteins	424
Number of tRNA	90
Number of 5s rRNA	8
Number of 16s rRNA	9
Number of 23s rRNA	9

Input Reads Summary
Oxford Nanopore Read Count	320,846
Oxford Nanopore Median Q Score	36
Illumina Read Count	9,646,460
Illumina Mean Coverage Depth	359.508×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads9,646,460

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 251%

PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness99.44%

PassedEstimated genome contamination1.28%

PassedAverage depth of coverage359.508×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Saccharococcus caldoxylosilyticus (ATCC® BAA-979™)