Organism Summary | |
---|---|
Catalog Number | ATCC® 35308™ |
Strain Alias | NCDO 2352 [1210] |
Isolation | Dental plaque |
Tags | Methylation DataType Strain |
Biosafety Level | 2 |
Type Strain | Yes |
Assembly Summary | |
---|---|
Date Published | April 5, 2023 |
Length | 3,171,577 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 7 (2 Circularized) |
N50 | 1,948,448 nt |
%GC | 49.92% |
Annotations Summary | |
---|---|
Number of CDS | 2464 |
Number of Hypothetical Proteins | 351 |
Number of tRNA | 51 |
Number of 5s rRNA | 6 |
Number of 16s rRNA | 4 |
Number of 23s rRNA | 4 |
Input Reads Summary | |
---|---|
Oxford Nanopore Read Count | 330,210 |
Oxford Nanopore Median Q Score | 24 |
Illumina Read Count | 11,733,112 |
Illumina Mean Coverage Depth | 436.663× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
---|
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
---|
Sequencing Quality Control | |
---|---|
Number of trimmed reads | 11,733,112 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
---|---|
Estimated genome completeness | 99.21% |
Estimated genome contamination | 0% |
Average depth of coverage | 436.663× |