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- Citrobacter freundii complex
- Citrobacter freundii
Citrobacter freundii (ATCC® BAA-3039™)
Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | August 3, 2020 |
| Length | 4,968,562 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 7 (4 Circularized) |
| Assembly Level | Chromosome |
| N50 | 4,752,125 nt |
| %GC | 51.94% |
| Organism Summary | |
|---|---|
| Name | ATCC® BAA-3039™ |
| Isolation | Urine |
| Biosafety Level | 2 |
| Type Strain | No |
| Annotations Summary | |
|---|---|
| Number of CDS | 4,626 |
| Number of Hypothetical Proteins | 239 |
| Number of tRNA | 83 |
| Number of 5s rRNA | 9 |
| Number of 16s rRNA | 8 |
| Number of 23s rRNA | 8 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 1,485,860 |
| Oxford Nanopore Median Q Score | 23 |
| Illumina Read Count | 2,865,745 |
| Illumina Mean Coverage Depth | 126.435× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads2,865,745
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness99.97%
PassedEstimated genome contamination0.53%
PassedAverage depth of coverage126.435×
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