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Overview
Annotations
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | April 29, 2024 |
| Length | 12,726,317 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 27 |
| Assembly Level | Scaffold |
| N50 | 748,212 nt |
| %GC | 38.14% |
| Organism Summary | |
|---|---|
| Name | ATCC® MYA-4940™ |
| Genotype | MATalpha PDI1::GAPDH-PDI1::LEU2 ura3- 52 trp1 leu2-delta200 his3-delta200 pep4::HIS3 prbd1.6R can1 GAL |
| Isolation | Parent strain BJ5464 |
| Biosafety Level | 1 |
| Type Strain | No |
| Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 734 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 619,952 |
| Oxford Nanopore Median Q Score | 34 |
| Illumina Read Count | 34,306,368 |
| Illumina Mean Coverage Depth | 389.584× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads34,306,368
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0.05%
BUSCO Quality Control
Metrics assessing the assembly quality (from BUSCO).
2 out of 2 passed
PassedEstimated genome completeness96.9%
PassedAverage depth of coverage389.584×
Notes
This fungus was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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