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Overview
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 43971™ |
| Strain Alias | CIP 60.62 [LT2, CCUG 42060, NCIMB 11450, NCTC 12416] |
| Isolation | Derived from the hydrogen sulfide producing wild strain LT2, United States, 1960 |
| Tags | Methylation DataType Strain |
| Biosafety Level | 2 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | April 28, 2023 |
| Length | 4,949,813 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 5 (1 Circularized) |
| N50 | 4,793,644 nt |
| %GC | 52.24% |
| Annotations Summary | |
|---|---|
| Number of CDS | 4728 |
| Number of Hypothetical Proteins | 196 |
| Number of tRNA | 86 |
| Number of 5s rRNA | 8 |
| Number of 16s rRNA | 7 |
| Number of 23s rRNA | 7 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 47,490 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 7,008,111 |
| Illumina Mean Coverage Depth | 175.895× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 7,008,111 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 99.71% |
| Estimated genome contamination | 0.44% |
| Illumina depth of coverage | 175.895× |
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