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  • Odoribacter splanchnicus

Odoribacter splanchnicus (ATCC® 29572™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Level
Date PublishedDecember 15, 2021
Length4,392,273 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs1 (All Circularized)
Assembly SummaryComplete
N504,392,273 nt
%GC43.36%
Organism Summary
NameATCC® 29572™
IsolationAbdominal abscess
TagsType Strain
Biosafety Level2
Type StrainYes
Annotations Summary
Number of CDS3,685
Number of Hypothetical Proteins2,137
Number of tRNA59
Number of 5s rRNA4
Number of 16s rRNA4
Number of 23s rRNA4
Input Reads Summary
Oxford Nanopore Read Count503,432
Oxford Nanopore Median Q Score24
Illumina Read Count19,196,802
Illumina Mean Coverage Depth613.596×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads19,196,802
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.46%
PassedEstimated genome contamination0%
PassedAverage depth of coverage613.596×
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