ATCC® BAA-294™ | Phenylobacterium lituiforme

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® BAA-294™
Strain Alias	FaiI3 [DSM 14363]
Isolation	Aquifer; isolated September 2000
Tags	Methylation DataType Strain
Biosafety Level	1
Type Strain	Yes

Assembly Summary
Date Published	March 5, 2024
Length	4,279,323 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	1 (All Circularized)
N50	4,279,323 nt
%GC	71.04%

Annotations Summary
Number of CDS	4136
Number of Hypothetical Proteins	659
Number of tRNA	46
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	20,343
Oxford Nanopore Median Q Score	22
Illumina Read Count	3,931,138
Illumina Mean Coverage Depth	135.813×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

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	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	3,931,138
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.89%
Estimated genome contamination	1.98%
Illumina depth of coverage	135.813×
ONT depth of coverage	17.277×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions