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Overview
Annotations
Related Genomes
Quality Control
Organism Summary | |
|---|---|
| Catalog Number | ATCC® 46592™ |
| Strain Alias | C-2 |
| Isolation | Red koji |
| Biosafety Level | 1 |
| Type Strain | No |
Assembly Summary | |
|---|---|
| Date Published | September 16, 2025 |
| Length | 24,546,581 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 12 (0 Circularized) |
| N50 | 4,246,175 nt |
| %GC | 48.93% |
Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 750 |
Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 201,181 |
| Oxford Nanopore Median Q Score | 41 |
| Illumina Read Count | 39,692,738 |
| Illumina Mean Coverage Depth | 226.159× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Microbes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Product
Sequencing Quality Control
Sequencing Quality Control Metrics | |
|---|---|
| Number of trimmed reads | 39,692,738 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
BUSCO Quality Control
BUSCO Quality Control Metrics | |
|---|---|
| Estimated genome completeness | 98.9% |
| Average depth of coverage | 226.159× |
Notes
This fungus was assembled, annotated, and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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