ATCC® BAA-2752™ | Vibrio campbellii

Overview

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Quality Control

Assembly Summary
Date Published	September 25, 2024
Length	6,019,377 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	10 (1 Circularized)
N50	2,173,071 nt
%GC	45.42%

Annotations Summary
Number of CDS	5567
Number of Hypothetical Proteins	634
Number of tRNA	121
Number of 5s rRNA	9
Number of 16s rRNA	8
Number of 23s rRNA	8

Input Reads Summary
Oxford Nanopore Read Count	32,645
Oxford Nanopore Median Q Score	36
Illumina Read Count	10,441,930
Illumina Mean Coverage Depth	254.073×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

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		Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length

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Sequencing Quality Control

Sequencing Quality Control Metrics
Number of trimmed reads	10,441,930
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control Metrics
Estimated genome completeness	99.08%
Estimated genome contamination	0.35%
Illumina depth of coverage	254.073×
ONT depth of coverage	47.295×

This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions