ATCC® BAA-2151™ | Campylobacter jejuni

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	November 30, 2020
Length	1,701,143 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	3 (All Circularized)
Assembly Level	Complete
N50	1,618,466 nt
%GC	30.48%

Organism Summary
Name	ATCC® BAA-2151™
Isolation	Human patient during clinical trial. Isolated by the Center for Vaccine Development (CVD).
Biosafety Level	2
Type Strain	No

Annotations Summary
Number of CDS	1,704
Number of Hypothetical Proteins	203
Number of tRNA	44
Number of 5s rRNA	3
Number of 16s rRNA	3
Number of 23s rRNA	3

Input Reads Summary
Oxford Nanopore Read Count	248,437
Oxford Nanopore Median Q Score	27
Illumina Read Count	21,458,960
Illumina Mean Coverage Depth	1,717.923×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads21,458,960

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0%

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness99.85%

PassedEstimated genome contamination0.11%

PassedAverage depth of coverage1,717.923×