Organism Summary | |
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Catalog Number | ATCC® 19108™ |
Strain Alias | Virginia 67 (Type C) |
Isolation | Juvenile hard clams, Mercenaria mercenaria |
Tags | Methylation Data |
Biosafety Level | 1 |
Type Strain | No |
Assembly Summary | |
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Date Published | August 8, 2023 |
Length | 5,300,479 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 2 (All Circularized) |
N50 | 3,568,579 nt |
%GC | 45.32% |
Annotations Summary | |
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Number of CDS | 4738 |
Number of Hypothetical Proteins | 606 |
Number of tRNA | 114 |
Number of 5s rRNA | 12 |
Number of 16s rRNA | 11 |
Number of 23s rRNA | 11 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 530,857 |
Oxford Nanopore Median Q Score | 24 |
Illumina Read Count | 9,633,692 |
Illumina Mean Coverage Depth | 251.229× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 9,633,692 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 99.47% |
Estimated genome contamination | 0.62% |
Average depth of coverage | 251.229× |