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Overview
Annotations
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | December 15, 2021 |
| Length | 14,817,687 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 21 (0 Circularized) |
| N50 | 1,012,114 nt |
| %GC | 32.88% |
| Organism Summary | |
|---|---|
| Name | ATCC® 22028™ |
| Strain Name | CBS 2163 [ATCC 56499, CCRC 21397, DBVPG 6243, DSM 70294, MUCL 30238, NCYC 523, NRRL Y-8283, UCD 57-17] |
| Isolation | Soil |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | |
| Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 738 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 529,436 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 18,874,437 |
| Illumina Mean Coverage Depth | 170.45× |
| Illumina Median Q Score | 37 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads18,874,437
PassedMedian Q score, all bases37
PassedPercent of median Q scores per cycle greater than 251%
PassedAmbiguous content (% N bases)0%
BUSCO Quality Control
Metrics assessing the assembly quality (from BUSCO).
2 out of 2 passed
PassedEstimated genome completeness89.05%
PassedAverage depth of coverage170.45×
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