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Overview
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® BAA-105™ |
| Strain Alias | NCIMB 13584 [NVI 88/478] |
| Isolation | Atlantic salmon, Salmo salar, with winter ulcer disease |
| Tags | Methylation DataType Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | February 25, 2023 |
| Length | 5,349,273 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 9 (1 Circularized) |
| N50 | 5,117,060 nt |
| %GC | 39.52% |
| Annotations Summary | |
|---|---|
| Number of CDS | 4643 |
| Number of Hypothetical Proteins | 661 |
| Number of tRNA | 135 |
| Number of 5s rRNA | 20 |
| Number of 16s rRNA | 18 |
| Number of 23s rRNA | 18 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 61,676 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 6,926,917 |
| Illumina Mean Coverage Depth | 170.997× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 6,926,917 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 100% |
| Estimated genome contamination | 1.35% |
| Average depth of coverage | 170.997× |
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