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- Pseudomonas aeruginosa group
- Pseudomonas aeruginosa
Pseudomonas aeruginosa (ATCC® BAA-3109™)
Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | August 31, 2020 |
| Length | 7,161,544 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 5 (2 Circularized) |
| Assembly Level | Chromosome |
| N50 | 7,138,804 nt |
| %GC | 65.87% |
| Organism Summary | |
|---|---|
| Name | ATCC® BAA-3109™ |
| Isolation | Respiratory bronchoalveolar lavage |
| Tags | GPS |
| Biosafety Level | 2 |
| Type Strain | No |
| Annotations Summary | |
|---|---|
| Number of CDS | 6,778 |
| Number of Hypothetical Proteins | 857 |
| Number of tRNA | 64 |
| Number of 5s rRNA | 4 |
| Number of 16s rRNA | 4 |
| Number of 23s rRNA | 4 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 219,067 |
| Oxford Nanopore Median Q Score | 23 |
| Illumina Read Count | 6,912,213 |
| Illumina Mean Coverage Depth | 191.864× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads6,912,213
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness99.68%
PassedEstimated genome contamination0.11%
PassedAverage depth of coverage191.864×
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