As of May 2024, to guarantee the long-term sustainability of the portal and to continue to provide you with reference-quality genomes, we have transitioned the ATCC Genome Portal over to a supporting membership service. Learn more about ATCC supporting memberships here.
- Yersinia pseudotuberculosis complex
- Yersinia pestis
Yersinia pestis (ATCC® BAA-1613™)
Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | January 1, 2020 |
| Length | 4,663,686 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 2 (All Circularized) |
| Assembly Level | Complete |
| N50 | 4,567,476 nt |
| %GC | 47.63% |
| Organism Summary | |
|---|---|
| Name | ATCC® BAA-1613™ |
| Isolation | Derivative 6 of the A12 strain, which in turn is a derivative of the avirulent A1122 strain, originally isolated in 1939 from a California ground squirrel (Spermophilus beecheyi) |
| Biosafety Level | 2 |
| Type Strain | No |
| Annotations Summary | |
|---|---|
| Number of CDS | 4,144 |
| Number of Hypothetical Proteins | 302 |
| Number of tRNA | 68 |
| Number of 5s rRNA | 6 |
| Number of 16s rRNA | 6 |
| Number of 23s rRNA | 6 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 142,600 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 4,599,782 |
| Illumina Mean Coverage Depth | 175.756× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads4,599,782
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness99.79%
PassedEstimated genome contamination0%
PassedAverage depth of coverage175.756×
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline