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Overview
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® BAA-1613™ |
| Isolation | Derivative 6 of the A12 strain, which in turn is a derivative of the avirulent A1122 strain, originally isolated in 1939 from a California ground squirrel (Spermophilus beecheyi) |
| Tags | Methylation Data |
| Biosafety Level | 2 |
| Type Strain | No |
| Assembly Summary | |
|---|---|
| Date Published | January 1, 2020 |
| Length | 4,663,686 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 2 (All Circularized) |
| N50 | 4,567,476 nt |
| %GC | 47.63% |
| Annotations Summary | |
|---|---|
| Number of CDS | 4148 |
| Number of Hypothetical Proteins | 292 |
| Number of tRNA | 68 |
| Number of 5s rRNA | 6 |
| Number of 16s rRNA | 6 |
| Number of 23s rRNA | 6 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 142,600 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 4,599,782 |
| Illumina Mean Coverage Depth | 175.756× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 4,599,782 |
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 99.79% |
| Estimated genome contamination | 0% |
| Average depth of coverage | 175.756× |
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