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- Citrobacter freundii complex
- Citrobacter freundii
Citrobacter freundii (ATCC® BAA-2564™)
Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | September 5, 2023 |
| Length | 5,733,635 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 10 (8 Circularized) |
| Assembly Level | None |
| N50 | 5,232,562 nt |
| %GC | 51.64% |
| Organism Summary | |
|---|---|
| Name | ATCC® BAA-2564™ |
| Isolation | Cheese |
| Biosafety Level | 1 |
| Type Strain | No |
| Annotations Summary | |
|---|---|
| Number of CDS | 5,516 |
| Number of Hypothetical Proteins | 443 |
| Number of tRNA | 85 |
| Number of 5s rRNA | 9 |
| Number of 16s rRNA | 8 |
| Number of 23s rRNA | 8 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 166,435 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 10,952,212 |
| Illumina Mean Coverage Depth | 264.686× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads10,952,212
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination1.9%
PassedAverage depth of coverage264.686×
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