Organism Summary | |
---|---|
Catalog Number | ATCC® BAA-488™ |
Isolation | Production fluid from Kubiki oil reservoir; isolated June 1997 by Yoh Takahata |
Tags | Methylation DataType Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Assembly Summary | |
---|---|
Date Published | November 22, 2019 |
Length | 1,823,488 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 1 (All Circularized) |
N50 | 1,823,488 nt |
%GC | 46.1% |
Annotations Summary | |
---|---|
Number of CDS | 1810 |
Number of Hypothetical Proteins | 158 |
Number of tRNA | 46 |
Number of 5s rRNA | 1 |
Number of 16s rRNA | 1 |
Number of 23s rRNA | 1 |
Input Reads Summary | |
---|---|
Oxford Nanopore Read Count | 66,244 |
Oxford Nanopore Median Q Score | 24 |
Illumina Read Count | 3,754,220 |
Illumina Mean Coverage Depth | 409.249× |
Illumina Median Q Score | 38 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
---|
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
---|
Sequencing Quality Control | |
---|---|
Number of trimmed reads | 3,754,220 |
Median Q score, all bases | 38 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
---|---|
Estimated genome completeness | 100% |
Estimated genome contamination | 0% |
Average depth of coverage | 409.249× |