ATCC® VR-656™ | Chlamydia abortus

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	June 11, 2025
Length	1,171,696 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	4 (All Circularized)
N50	1,144,389 nt
%GC	39.85%

Organism Summary
Name	ATCC® VR-656™
Isolation	Kidney from aborted ovine fetus.
Tags	Type Strain
Biosafety Level	2
Type Strain

Annotations Summary
Number of CDS	1006
Number of Hypothetical Proteins	186
Number of tRNA	41
Number of 5s rRNA	1
Number of 16s rRNA	1
Number of 23s rRNA	1

Input Reads Summary
Oxford Nanopore Read Count	423,663
Oxford Nanopore Median Q Score	42
Illumina Read Count	6,598,816
Illumina Mean Coverage Depth	496.019×
Illumina Median Q Score	40

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads6,598,816

PassedMedian Q score, all bases40

PassedPercent of median Q scores per cycle greater than 251%

PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness98.88%

PassedEstimated genome contamination0%

PassedAverage depth of coverage496.019×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Chlamydia abortus (ATCC® VR-656™)