ATCC® BAA-3339™ | Orbus wheelerorum

Overview

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Quality Control

Assembly Summary
Date Published	September 13, 2024
Length	2,997,677 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	2 (1 Circularized)
N50	2,986,666 nt
%GC	36.19%

Annotations Summary
Number of CDS	2597
Number of Hypothetical Proteins	275
Number of tRNA	49
Number of 5s rRNA	5
Number of 16s rRNA	4
Number of 23s rRNA	4

Input Reads Summary
Oxford Nanopore Read Count	61,133
Oxford Nanopore Median Q Score	37
Illumina Read Count	12,233,344
Illumina Mean Coverage Depth	601.671×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

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		Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length

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Sequencing Quality Control
Number of trimmed reads	12,233,344
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	98.88%
Estimated genome contamination	0%
Illumina depth of coverage	601.671×
ONT depth of coverage	206.532×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions