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Overview
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 21680™ |
| Strain Alias | NTK-u [IFO 13140, NCIB 12233] |
| Isolation | Derived from existing strain, A. faecalis subsp. myxogenes strain K |
| Tags | Methylation Data |
| Biosafety Level | 1 |
| Type Strain | No |
| Assembly Summary | |
|---|---|
| Date Published | November 30, 2020 |
| Length | 5,517,516 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 4 (3 Circularized) |
| N50 | 3,034,945 nt |
| %GC | 59.01% |
| Annotations Summary | |
|---|---|
| Number of CDS | 5151 |
| Number of Hypothetical Proteins | 504 |
| Number of tRNA | 54 |
| Number of 5s rRNA | 4 |
| Number of 16s rRNA | 4 |
| Number of 23s rRNA | 4 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 233,184 |
| Oxford Nanopore Median Q Score | 26 |
| Illumina Read Count | 17,357,179 |
| Illumina Mean Coverage Depth | 428.392× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 17,357,179 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 98.35% |
| Estimated genome contamination | 1.94% |
| Illumina depth of coverage | 428.392× |
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