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Overview
Annotations
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® MYA-4996™ |
| Isolation | Strawberry fruit, San Luis Obispo |
| Biosafety Level | 1 |
| Assembly Summary | |
|---|---|
| Date Published | February 21, 2025 |
| Length | 37,019,325 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 84 (0 Circularized) |
| N50 | 1,447,520 nt |
| %GC | 48.98% |
| Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 754 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 1,496,249 |
| Oxford Nanopore Median Q Score | 32 |
| Illumina Read Count | 75,694,120 |
| Illumina Mean Coverage Depth | 299.625× |
| Illumina Median Q Score | 40 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Genomes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 75,694,120 |
| Median Q score, all bases | 40 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| BUSCO Quality Control | |
|---|---|
| Estimated genome completeness | 99.5% |
| Average depth of coverage | 299.625× |
Notes
This fungus was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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