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Overview
Related Genomes
Quality Control
Organism Summary | |
|---|---|
| Catalog Number | ATCC® VR-1479™ |
| Strain Alias | M-variant (TC passaged) |
| Isolation | ATCC VR-1479 was created by serially passaging ATCC VR-1314 two times onto NCTC clone 929 (L-929) cells, ATCC CCL-1. The original strain was isolated from the heart of mice inoculated by peripheral route with EMC of swine. |
| Biosafety Level | 2 |
Assembly Summary | |
|---|---|
| Date Published | April 10, 2024 |
| Length | 7,547 nt |
| Sequencing Technology | Illumina |
| Number of Contigs | 1 (0 Circularized) |
| Assembly Level | Complete |
| N50 | 7,547 nt |
| %GC | 47.87% |
Annotations Summary |
|---|
Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 0 |
| Oxford Nanopore Median Q Score | 0 |
| Illumina Read Count | 16,745,478 |
| Illumina Mean Coverage Depth | 7,109.949× |
| Illumina Median Q Score | 34 |
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Genome
Sequencing Quality Control
Sequencing Quality Control Metrics | |
|---|---|
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
Notes
This virus was assembled and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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