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Overview
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Quality Control
| Assembly Summary | |
|---|---|
| Date Published | May 3, 2022 |
| Length | 1,748,445 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 4 (0 Circularized) |
| N50 | 597,284 nt |
| %GC | 30.46% |
| Organism Summary | |
|---|---|
| Name | ATCC® 49351™ |
| Strain Name | NCTC 11924 [47408, IMVS 1087] |
| Isolation | Feces of child with diarrhea |
| Tags | |
| Biosafety Level | 2 |
| Type Strain | |
| Annotations Summary | |
|---|---|
| Number of CDS | 1806 |
| Number of Hypothetical Proteins | 244 |
| Number of tRNA | 43 |
| Number of 5s rRNA | 2 |
| Number of 16s rRNA | 3 |
| Number of 23s rRNA | 2 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 25,435 |
| Oxford Nanopore Median Q Score | 21 |
| Illumina Read Count | 17,277,569 |
| Illumina Mean Coverage Depth | 1,393.939× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads17,277,569
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 251%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness99.26%
PassedEstimated genome contamination0.18%
PassedAverage depth of coverage1,393.939×
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