Organism Summary | |
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Catalog Number | ATCC® 49351™ |
Strain Alias | NCTC 11924 [47408, IMVS 1087] |
Isolation | Feces of child with diarrhea |
Biosafety Level | 2 |
Type Strain | No |
Assembly Summary | |
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Date Published | May 3, 2022 |
Length | 1,748,445 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 4 (0 Circularized) |
N50 | 597,284 nt |
%GC | 30.46% |
Annotations Summary | |
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Number of CDS | 1806 |
Number of Hypothetical Proteins | 244 |
Number of tRNA | 43 |
Number of 5s rRNA | 2 |
Number of 16s rRNA | 3 |
Number of 23s rRNA | 2 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 25,435 |
Oxford Nanopore Median Q Score | 21 |
Illumina Read Count | 17,277,569 |
Illumina Mean Coverage Depth | 1,393.939× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 17,277,569 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 99.26% |
Estimated genome contamination | 0.18% |
Average depth of coverage | 1,393.939× |