ATCC® TSD-189™ | Oceanivirga miroungae

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	June 10, 2025
Length	1,417,509 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	12 (5 Circularized)
N50	1,356,152 nt
%GC	27.87%

Organism Summary
Name	ATCC® TSD-189™
Tags	Type Strain
Biosafety Level	1
Type Strain

Annotations Summary
Number of CDS	1281
Number of Hypothetical Proteins	199
Number of tRNA	58
Number of 5s rRNA	7
Number of 16s rRNA	6
Number of 23s rRNA	6

Input Reads Summary
Oxford Nanopore Read Count	74,384
Oxford Nanopore Median Q Score	42
Illumina Read Count	1,535,952
Illumina Mean Coverage Depth	188.295×
Illumina Median Q Score	40

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads1,535,952

PassedMedian Q score, all bases40

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0.03%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness92.65%

PassedEstimated genome contamination3.42%

PassedAverage depth of coverage188.295×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions. CheckM completeness metric has been omitted from publication QC criteria for this item due to its rarity in the CheckM database as a type strain deposit.

Oceanivirga miroungae (ATCC® TSD-189™)