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Overview
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 9610™ |
| Strain Alias | 33114 [CCUG 11291, CCUG 12369, CIP 80.27, DSM 4780, LMG 7899, NCTC 12982] |
| Isolation | Tissue; glanders-like infection of the face |
| Tags | Methylation DataType Strain |
| Biosafety Level | 2 |
| Type Strain | Yes |
| Antigenic Properties | Biovar 1 |
| Assembly Summary | |
|---|---|
| Date Published | August 31, 2020 |
| Length | 4,555,542 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 1 (All Circularized) |
| N50 | 4,555,542 nt |
| %GC | 47.3% |
| Annotations Summary | |
|---|---|
| Number of CDS | 4065 |
| Number of Hypothetical Proteins | 199 |
| Number of tRNA | 83 |
| Number of 5s rRNA | 8 |
| Number of 16s rRNA | 7 |
| Number of 23s rRNA | 7 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 165,435 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 4,784,047 |
| Illumina Mean Coverage Depth | 217.639× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 4,784,047 |
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 97.47% |
| Estimated genome contamination | 1.4% |
| Illumina depth of coverage | 217.639× |
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