ATCC® BAA-3270™ | Pseudomonas paraeruginosa

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® BAA-3270™
Isolation	Peritoneal fluid
Biosafety Level	2
Type Strain	No

Assembly Summary
Date Published	February 21, 2025
Length	6,650,717 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	2 (1 Circularized)
N50	6,584,390 nt
%GC	66.41%

Annotations Summary
Number of CDS	6300
Number of Hypothetical Proteins	762
Number of tRNA	66
Number of 5s rRNA	4
Number of 16s rRNA	4
Number of 23s rRNA	4

Input Reads Summary
Oxford Nanopore Read Count	14,337
Oxford Nanopore Median Q Score	34
Illumina Read Count	9,522,896
Illumina Mean Coverage Depth	211.518×
Illumina Median Q Score	34

Most similar genomes

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

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	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

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Sequencing Quality Control
Number of trimmed reads	9,522,896
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	100%
Estimated genome contamination	0.17%
Average depth of coverage	211.518×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Pseudomonas paraeruginosa (ATCC® BAA-3270™)