Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | November 30, 2020 |
| Length | 4,548,572 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 7 (4 Circularized) |
| Assembly Level | Chromosome |
| N50 | 1,195,422 nt |
| %GC | 38.97% |
| Organism Summary | |
|---|---|
| Name | ATCC® 43839™ |
| Isolation | Farmed Atlantic salmon |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Annotations Summary | |
|---|---|
| Number of CDS | 4,338 |
| Number of Hypothetical Proteins | 1,722 |
| Number of tRNA | 105 |
| Number of 5s rRNA | 14 |
| Number of 16s rRNA | 13 |
| Number of 23s rRNA | 13 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 1,911,908 |
| Oxford Nanopore Median Q Score | 27 |
| Illumina Read Count | 17,483,440 |
| Illumina Mean Coverage Depth | 513.069× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | Uniprot ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads17,483,440
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality (from CheckM).
3 out of 3 passed
PassedEstimated genome completeness99.39%
PassedEstimated genome contamination1.71%
PassedAverage depth of coverage513.069×
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