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  • Aliivibrio
  • Aliivibrio salmonicida

Aliivibrio salmonicida (ATCC® 43839™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedNovember 30, 2020
Length4,548,572 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs7 (4 Circularized)
Assembly LevelChromosome
N501,195,422 nt
%GC38.97%
Organism Summary
NameATCC® 43839™
IsolationFarmed Atlantic salmon
TagsType Strain
Biosafety Level1
Type StrainYes
Annotations Summary
Number of CDS4,338
Number of Hypothetical Proteins1,722
Number of tRNA105
Number of 5s rRNA14
Number of 16s rRNA13
Number of 23s rRNA13
Input Reads Summary
Oxford Nanopore Read Count1,911,908
Oxford Nanopore Median Q Score27
Illumina Read Count17,483,440
Illumina Mean Coverage Depth513.069×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads17,483,440
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.39%
PassedEstimated genome contamination1.71%
PassedAverage depth of coverage513.069×
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