ATCC® 27289™ | Mycobacterium tuberculosis variant bovis

Overview

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Related Genomes

Quality Control

Assembly Summary
Date Published	February 21, 2025
Length	4,309,645 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	2 (0 Circularized)
N50	4,304,912 nt
%GC	65.68%

Annotations Summary
Number of CDS	3990
Number of Hypothetical Proteins	429
Number of tRNA	45
Number of 5s rRNA	1
Number of 16s rRNA	1
Number of 23s rRNA	1

Input Reads Summary
Oxford Nanopore Read Count	126,315
Oxford Nanopore Median Q Score	26
Illumina Read Count	9,967,780
Illumina Mean Coverage Depth	334.287×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	9,967,780
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	98.44%
Estimated genome contamination	1%
Illumina depth of coverage	334.287×
ONT depth of coverage	273.033×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions