Purchased a strain from ATCC? Enter in the lot number to download the genome or learn more about our supporting memberships here.
- unclassified Pseudomonas
- Pseudomonas sp.
Pseudomonas sp. (ATCC® 31171™)
Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | December 12, 2022 |
| Length | 6,360,594 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 2 (All Circularized) |
| N50 | 6,313,860 nt |
| %GC | 61.52% |
| Organism Summary | |
|---|---|
| Name | ATCC® 31171™ |
| Tags | |
| Biosafety Level | 1 |
| Type Strain | |
| Annotations Summary | |
|---|---|
| Number of CDS | 5666 |
| Number of Hypothetical Proteins | 473 |
| Number of tRNA | 79 |
| Number of 5s rRNA | 8 |
| Number of 16s rRNA | 7 |
| Number of 23s rRNA | 7 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 177,846 |
| Oxford Nanopore Median Q Score | 23 |
| Illumina Read Count | 11,265,427 |
| Illumina Mean Coverage Depth | 245.691× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads11,265,427
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness99.91%
PassedEstimated genome contamination2.41%
PassedAverage depth of coverage245.691×
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline