ATCC® TSD-142™ | Mycoplasma phocoeninasale

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® TSD-142™
Strain Alias	CSL7498
Isolation	Nasopharyngeal swab from California sea lion (Zalophus californianus)
Biosafety Level	2
Type Strain	No

Assembly Summary
Date Published	June 11, 2025
Length	788,861 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	1 (All Circularized)
N50	788,861 nt
%GC	29.01%

Annotations Summary
Number of CDS	601
Number of Hypothetical Proteins	129
Number of tRNA	33
Number of 5s rRNA	1
Number of 16s rRNA	3
Number of 23s rRNA	3

Input Reads Summary
Oxford Nanopore Read Count	77,637
Oxford Nanopore Median Q Score	41
Illumina Read Count	1,162,570
Illumina Mean Coverage Depth	360.326×
Illumina Median Q Score	40

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

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Sequencing Quality Control
Number of trimmed reads	1,162,570
Median Q score, all bases	40
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.93%
Estimated genome contamination	0%
Illumina depth of coverage	360.326×
ONT depth of coverage	1,075.042×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions