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Overview
Genome Browser
Related Genomes
Quality Control
Organism Summary | |
|---|---|
| Catalog Number | ATCC® BAA-565™ |
| Strain Alias | FI-13295 [CIP 106867, DSM 44339] |
| Isolation | Cerebrospinal fluid of severely immunocompromised 50-year-old homosexual man with AIDS; isolated December 1990 by Claudio Piersimoni |
| Tags | Methylation DataType Strain |
| Biosafety Level | 2 |
| Type Strain | Yes |
Assembly Summary | |
|---|---|
| Date Published | September 5, 2023 |
| Length | 4,032,680 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 2 (1 Circularized) |
| N50 | 3,674,858 nt |
| %GC | 67.51% |
Annotations Summary | |
|---|---|
| Number of CDS | 3926 |
| Number of Hypothetical Proteins | 541 |
| Number of tRNA | 46 |
| Number of 5s rRNA | 2 |
| Number of 16s rRNA | 2 |
| Number of 23s rRNA | 2 |
Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 246,420 |
| Oxford Nanopore Median Q Score | 23 |
| Illumina Read Count | 8,274,625 |
| Illumina Mean Coverage Depth | 266.858× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Genome
Sequencing Quality Control
Sequencing Quality Control Metrics | |
|---|---|
| Number of trimmed reads | 8,274,625 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
Assembly Quality Control
Assembly Quality Control Metrics | |
|---|---|
| Estimated genome completeness | 97.33% |
| Estimated genome contamination | 1.25% |
| Illumina depth of coverage | 266.858× |
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