ATCC® BAA-1532™ | Tsukamurella pulmonis

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	October 31, 2023
Length	4,498,092 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	2 (0 Circularized)
N50	4,206,378 nt
%GC	71.13%

Organism Summary
Name	ATCC® BAA-1532™
Isolation	Blood
Tags	Methylation Data
Biosafety Level	2
Type Strain

Annotations Summary
Number of CDS	4353
Number of Hypothetical Proteins	656
Number of tRNA	49
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	131,944
Oxford Nanopore Median Q Score	24
Illumina Read Count	10,087,208
Illumina Mean Coverage Depth	332.282×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads10,087,208

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 251%

PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness99.94%

PassedEstimated genome contamination0.52%

PassedAverage depth of coverage332.282×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Tsukamurella pulmonis (ATCC® BAA-1532™)