Organism Summary | |
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Catalog Number | ATCC® 25556™ |
Strain Alias | VPI 2368 [EB/D/1/4a, NCTC 10723] |
Isolation | Duck caecum |
Tags | Methylation DataType Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Assembly Summary | |
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Date Published | October 30, 2024 |
Length | 2,002,857 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 7 (4 Circularized) |
N50 | 1,791,147 nt |
%GC | 29.17% |
Annotations Summary | |
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Number of CDS | 1805 |
Number of Hypothetical Proteins | 210 |
Number of tRNA | 55 |
Number of 5s rRNA | 7 |
Number of 16s rRNA | 6 |
Number of 23s rRNA | 6 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 987,493 |
Oxford Nanopore Median Q Score | 20 |
Illumina Read Count | 9,333,550 |
Illumina Mean Coverage Depth | 687.886× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 9,333,550 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 97.75% |
Estimated genome contamination | 1.12% |
Average depth of coverage | 687.886× |
This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions