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Overview
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Quality Control
| Assembly Summary | |
|---|---|
| Date Published | September 2, 2021 |
| Length | 2,697,381 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 4 (0 Circularized) |
| N50 | 2,691,825 nt |
| %GC | 29.28% |
| Organism Summary | |
|---|---|
| Name | ATCC® 21000™ |
| Isolation | Non-motile mutant derived from a motile, wild-type, soil isolate |
| Tags | |
| Biosafety Level | 2 |
| Type Strain | |
| Annotations Summary | |
|---|---|
| Number of CDS | 2512 |
| Number of Hypothetical Proteins | 370 |
| Number of tRNA | 78 |
| Number of 5s rRNA | 9 |
| Number of 16s rRNA | 1 |
| Number of 23s rRNA | 9 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 904,086 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 6,460,392 |
| Illumina Mean Coverage Depth | 257.406× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads6,460,392
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness97.85%
PassedEstimated genome contamination2.07%
PassedAverage depth of coverage257.406×
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