Organism Summary | |
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Catalog Number | ATCC® 11568™ |
Strain Alias | DSM 7234 [CCEB 513, CCM 2657, CCTM 1850, CCUG 1427, CECT 317, CIP 63.27, HNCMB 173005, IAM 1513, IMET 10409, JCM 2788, LMG 2089, NCIB 9393, NCTC 8545, NRRL B-1496, R. Hugh 342, USCC 1337, VKM B-893] |
Isolation | Freshwater |
Tags | Methylation DataType Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Assembly Summary | |
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Date Published | September 29, 2020 |
Length | 3,422,351 nt |
Sequencing Technology | Illumina + Oxford Nanopore |
Number of Contigs | 1 (All Circularized) |
N50 | 3,422,351 nt |
%GC | 67.27% |
Annotations Summary | |
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Number of CDS | 3356 |
Number of Hypothetical Proteins | 500 |
Number of tRNA | 51 |
Number of 5s rRNA | 2 |
Number of 16s rRNA | 2 |
Number of 23s rRNA | 2 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 22,281 |
Oxford Nanopore Median Q Score | 24 |
Illumina Read Count | 6,027,472 |
Illumina Mean Coverage Depth | 248.459× |
Illumina Median Q Score | 38 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 6,027,472 |
Median Q score, all bases | 38 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 100% |
Estimated genome contamination | 0.48% |
Average depth of coverage | 248.459× |