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Overview
Genome Browser
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 11568™ |
| Strain Alias | DSM 7234 [CCEB 513, CCM 2657, CCTM 1850, CCUG 1427, CECT 317, CIP 63.27, HNCMB 173005, IAM 1513, IMET 10409, JCM 2788, LMG 2089, NCIB 9393, NCTC 8545, NRRL B-1496, R. Hugh 342, USCC 1337, VKM B-893] |
| Isolation | Freshwater |
| Tags | Methylation DataType Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | September 29, 2020 |
| Length | 3,422,351 nt |
| Sequencing Technology | Illumina + Oxford Nanopore |
| Number of Contigs | 1 (All Circularized) |
| N50 | 3,422,351 nt |
| %GC | 67.27% |
| Annotations Summary | |
|---|---|
| Number of CDS | 3358 |
| Number of Hypothetical Proteins | 480 |
| Number of tRNA | 51 |
| Number of 5s rRNA | 2 |
| Number of 16s rRNA | 2 |
| Number of 23s rRNA | 2 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 22,281 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 6,027,472 |
| Illumina Mean Coverage Depth | 248.459× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 6,027,472 |
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 99.37% |
| Estimated genome contamination | 3.61% |
| Illumina depth of coverage | 248.459× |
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