Organism Summary | |
---|---|
Catalog Number | ATCC® BAA-3312™ |
Strain Alias | 1114376 |
Isolation | Bronchial brushing |
Biosafety Level | 2 |
Type Strain | No |
Assembly Summary | |
---|---|
Date Published | March 24, 2025 |
Length | 7,159,609 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 16 (2 Circularized) |
N50 | 1,337,297 nt |
%GC | 65.52% |
Annotations Summary | |
---|---|
Number of CDS | 6645 |
Number of Hypothetical Proteins | 658 |
Number of tRNA | 64 |
Number of 5s rRNA | 4 |
Number of 16s rRNA | 4 |
Number of 23s rRNA | 4 |
Input Reads Summary | |
---|---|
Oxford Nanopore Read Count | 18,357 |
Oxford Nanopore Median Q Score | 35 |
Illumina Read Count | 5,380,190 |
Illumina Mean Coverage Depth | 200.306× |
Illumina Median Q Score | 40 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
---|
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
---|
Sequencing Quality Control | |
---|---|
Number of trimmed reads | 5,380,190 |
Median Q score, all bases | 40 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
---|---|
Estimated genome completeness | 99.68% |
Estimated genome contamination | 0.17% |
Average depth of coverage | 200.306× |
This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions