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  • Saccharophagus
  • Saccharophagus degradans

Saccharophagus degradans (ATCC® 43961™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedFebruary 26, 2020
Length5,055,637 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs2 (0 Circularized)
Assembly LevelChromosome
N504,895,177 nt
%GC45.83%
Organism Summary
NameATCC® 43961™
IsolationDecomposing salt marsh grass, Spartina alternifolia; Chesapeake Bay salt marsh, Matthews County
TagsType Strain
Biosafety Level1
Type StrainYes
Annotations Summary
Number of CDS4,144
Number of Hypothetical Proteins2,218
Number of tRNA40
Number of 5s rRNA2
Number of 16s rRNA2
Number of 23s rRNA2
Input Reads Summary
Oxford Nanopore Read Count69,967
Oxford Nanopore Median Q Score24
Illumina Read Count4,115,138
Illumina Mean Coverage Depth146.268×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads4,115,138
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)-

Assembly Quality Control

Metrics assessing the assembly quality
3/3
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination1.29%
PassedAverage depth of coverage146.268×
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