ATCC® BAA-225™ | Caldanaerobacter subterraneus subsp. subterraneus

Overview

Genome Browser

Related Genomes

Quality Control

Organism Summary
Catalog Number	ATCC® BAA-225™
Strain Alias	SEBR 7858 [CNCM I-2383, DSM 13054]
Isolation	Wellhead from Lacq Superieur oilfield in southwest France
Tags	Type Strain
Biosafety Level	1
Type Strain	Yes

Assembly Summary
Date Published	November 21, 2025
Length	2,685,717 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	2 (0 Circularized)
N50	2,683,097 nt
%GC	37.59%

Annotations Summary
Number of CDS	2697
Number of Hypothetical Proteins	279
Number of tRNA	62
Number of 5s rRNA	4
Number of 16s rRNA	4
Number of 23s rRNA	4

Input Reads Summary
Oxford Nanopore Read Count	26,016
Oxford Nanopore Median Q Score	37
Illumina Read Count	2,606,390
Illumina Mean Coverage Depth	247.541×
Illumina Median Q Score	40

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Microbes

0 out of 0 selected (Select All / Deselect All).

		Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length

Displaying Product

Sequencing Quality Control

Sequencing Quality Control Metrics
Number of trimmed reads	2,606,390
Median Q score, all bases	40
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control Metrics
Estimated genome completeness	98.7%
Estimated genome contamination	0.25%
Illumina depth of coverage	247.541×
ONT depth of coverage	98.796×

This bacterium was assembled, annotated, and curated using Oatmeal v3.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions