Assembly Summary | |
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Date Published | October 31, 2023 |
Length | 3,189,139 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 23 (6 Circularized) |
Assembly Level | Chromosome |
N50 | 509,970 nt |
%GC | 46.25% |
Organism Summary | |
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Name | ATCC® 25598™ |
Isolation | Milking machine |
Tags | Type Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Annotations Summary | |
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Number of CDS | 3,008 |
Number of Hypothetical Proteins | 408 |
Number of tRNA | 43 |
Number of 5s rRNA | 4 |
Number of 16s rRNA | 5 |
Number of 23s rRNA | 5 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 47,254 |
Oxford Nanopore Median Q Score | 24 |
Illumina Read Count | 8,172,086 |
Illumina Mean Coverage Depth | 378.923× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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No genomes with >95% similarity found.
No genomes found sharing the same genus.
This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions