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Overview
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Quality Control
| Assembly Summary | |
|---|---|
| Date Published | February 25, 2023 |
| Length | 6,787,684 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 15 (0 Circularized) |
| N50 | 638,079 nt |
| %GC | 66.55% |
| Organism Summary | |
|---|---|
| Name | ATCC® 15668™ |
| Strain Name | 2167 [ACM 489, CCUG 14481, DSM 39, DSM 50251, IAM 12409, IMET 10620, JCM 5833, KS 0057, L.E. den Dooren de Jong 7, LMG 1226, NCIB 9681, NCTC 10683, R.Y. Stanier 14] |
| Isolation | Soil enriched with acetamide |
| Tags | Methylation DataType Strain |
| Biosafety Level | 1 |
| Type Strain | |
| Annotations Summary | |
|---|---|
| Number of CDS | 6093 |
| Number of Hypothetical Proteins | 873 |
| Number of tRNA | 80 |
| Number of 5s rRNA | 5 |
| Number of 16s rRNA | 5 |
| Number of 23s rRNA | 5 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 15,683 |
| Oxford Nanopore Median Q Score | 23 |
| Illumina Read Count | 5,736,416 |
| Illumina Mean Coverage Depth | 108.458× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads5,736,416
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 251%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness99.85%
PassedEstimated genome contamination0.52%
PassedAverage depth of coverage108.458×
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