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Overview
Genome Browser
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 15668™ |
| Strain Alias | 2167 [ACM 489, CCUG 14481, DSM 39, DSM 50251, IAM 12409, IMET 10620, JCM 5833, KS 0057, L.E. den Dooren de Jong 7, LMG 1226, NCIB 9681, NCTC 10683, R.Y. Stanier 14] |
| Isolation | Soil enriched with acetamide |
| Tags | Methylation DataType Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | February 25, 2023 |
| Length | 6,787,684 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 15 (0 Circularized) |
| N50 | 638,079 nt |
| %GC | 66.55% |
| Annotations Summary | |
|---|---|
| Number of CDS | 6093 |
| Number of Hypothetical Proteins | 873 |
| Number of tRNA | 80 |
| Number of 5s rRNA | 5 |
| Number of 16s rRNA | 5 |
| Number of 23s rRNA | 5 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 15,683 |
| Oxford Nanopore Median Q Score | 23 |
| Illumina Read Count | 5,736,416 |
| Illumina Mean Coverage Depth | 108.458× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 5,736,416 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 99.85% |
| Estimated genome contamination | 0.52% |
| Average depth of coverage | 108.458× |
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