ATCC® 35074™ | Deinococcus proteolyticus

Overview

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Quality Control

Assembly Summary
Date Published	October 30, 2024
Length	2,886,571 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	5 (All Circularized)
N50	2,145,027 nt
%GC	65.64%

Annotations Summary
Number of CDS	2738
Number of Hypothetical Proteins	518
Number of tRNA	47
Number of 5s rRNA	3
Number of 16s rRNA	3
Number of 23s rRNA	3

Input Reads Summary
Oxford Nanopore Read Count	100,597
Oxford Nanopore Median Q Score	33
Illumina Read Count	2,299,332
Illumina Mean Coverage Depth	115.517×
Illumina Median Q Score	40

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	2,299,332
Median Q score, all bases	40
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.77%
Estimated genome contamination	0.12%
Illumina depth of coverage	115.517×
ONT depth of coverage	283.798×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions